CRISPRone

CRISPRone report for SRR9713356

♦ Seq 1: NODE_36_length_38286_cov_5.676362

⇒Summary: seq-len = 38286 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23990-38281 bp Zoom in on locus 1 x9 Gene: cls000004:cas6 Type: other Location: 23990-24721 bp Gene: unk Type: unknown Location: 24739-25365 bp Gene: unk Type: unknown Location: 25341-26120 bp Gene: cash17:cash17 Type: Type- Location: 26165-27592 bp Gene: unk Type: unknown Location: 27589-28068 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 28082-29491 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 29496-31298 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 31291-32430 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 32450-33289 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 33302-33712 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 33709-34659 bp Gene: cd09634:cas1 Type: universal Location: 34679-36949 bp Gene: cd09725:cas2 Type: universal Location: 36943-37233 bp CRISPR array Location: 37681-38281 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 37681-38281 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37681-38281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_112_length_17699_cov_5.447518

⇒Summary: seq-len = 17699 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17309-17698 bp Zoom in on locus 1 x6 CRISPR array Location: 17309-17698 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17309-17698 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17309-17698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_11_length_65184_cov_5.895208

⇒Summary: seq-len = 65184 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17242-20855 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 17242-18141 bp Gene: unk Type: unknown Location: 18138-19403 bp Gene: unk Type: unknown Location: 19411-20184 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 20187-20855 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)