CRISPRone

CRISPRone report for SRR9713367

♦ Seq 1: NODE_15_length_125965_cov_8.305615

⇒Summary: seq-len = 125965 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11532-15145 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 11532-12431 bp Gene: unk Type: unknown Location: 12428-13693 bp Gene: unk Type: unknown Location: 13701-14474 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 14477-15145 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_11_length_145890_cov_8.590407

⇒Summary: seq-len = 145890 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135748-145385 bp Zoom in on locus 1 x37 antiRepeat Location: 135748-135793 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 135861-140171 bp Gene: unk Type: unknown Location: 140187-140711 bp Gene: unk Type: unknown Location: 140778-141086 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 141206-142138 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 142142-142474 bp CRISPR array Location: 142583-145385 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 142583-145385 bp Num of repeats: 37 Spacers: s1-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142583-145385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_21_length_92148_cov_8.201123

⇒Summary: seq-len = 92148 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31741-46595 bp Zoom in on locus 1 x18 CRISPR array Location: 31741-32967 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31741-32967 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09634:cas1 Type: universal Location: 33699-35969 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35989-36939 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36936-37346 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37359-38198 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38218-39357 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39350-41152 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41157-42566 bp Gene: unk Type: unknown Location: 42580-43059 bp Gene: cash17:cash17 Type: Type- Location: 43056-44483 bp Gene: unk Type: unknown Location: 44528-45307 bp Gene: unk Type: unknown Location: 45283-45909 bp Gene: cls000004:cas6 Type: other Location: 45927-46595 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31741-32967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)