CRISPRone

CRISPRone report for SRR9713369

♦ Seq 1: NODE_2_length_480120_cov_14.908296

⇒Summary: seq-len = 480120 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122904-126517 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 122904-123572 bp Gene: unk Type: unknown Location: 123575-124348 bp Gene: unk Type: unknown Location: 124356-125621 bp Gene: pfam13280:WYL Type: other Location: 125618-126517 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_433136_cov_14.188819

⇒Summary: seq-len = 433136 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 33314-33604 bp Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36832 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_146755_cov_15.375440

⇒Summary: seq-len = 146755 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138450-146750 bp Zoom in on locus 1 x21 Gene: cd09643:cas9 Type: Subtype-II-C Location: 138450-142760 bp Gene: unk Type: unknown Location: 142776-143300 bp Gene: unk Type: unknown Location: 143367-143675 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 143795-144727 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 144731-145063 bp CRISPR array Location: 145172-146750 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 145172-146750 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145172-146750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_46_length_1850_cov_15.011699

⇒Summary: seq-len = 1850 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-975 bp Zoom in on locus 1 x13 CRISPR array Location: 9-975 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 9-975 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)