CRISPRone

CRISPRone report for SRR9713371

♦ Seq 1: NODE_13_length_148958_cov_23.053202

⇒Summary: seq-len = 148958 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-10622 bp Zoom in on locus 1 x38 CRISPR array Location: 907-3787 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 907-3787 bp Num of repeats: 38 Spacers: s1-s37 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3896-4228 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4232-5164 bp Gene: unk Type: unknown Location: 5284-5592 bp Gene: unk Type: unknown Location: 5659-6183 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 6199-10509 bp antiRepeat Location: 10577-10622 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-3787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_433136_cov_19.396046

⇒Summary: seq-len = 433136 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386580-401498 bp Zoom in on locus 1 x18 Gene: cls000004:cas6 Type: other Location: 386580-387311 bp Gene: unk Type: unknown Location: 387329-387955 bp Gene: unk Type: unknown Location: 387931-388710 bp Gene: cash17:cash17 Type: Type- Location: 388755-390182 bp Gene: unk Type: unknown Location: 390179-390658 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 390672-392081 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 392086-393888 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 393881-395020 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 395040-395879 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 395892-396302 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 396299-397249 bp Gene: cd09634:cas1 Type: universal Location: 397269-399539 bp Gene: cd09725:cas2 Type: universal Location: 399533-399823 bp CRISPR array Location: 400271-401498 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 400271-401498 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 400271-401498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_480060_cov_20.826675

⇒Summary: seq-len = 480060 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353604-357217 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 353604-354503 bp Gene: unk Type: unknown Location: 354500-355765 bp Gene: unk Type: unknown Location: 355773-356546 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 356549-357217 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)