CRISPRone

CRISPRone report for SRR9713374

♦ Seq 1: NODE_12_length_141257_cov_18.138277

⇒Summary: seq-len = 141257 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36838 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_11_length_148880_cov_19.846410

⇒Summary: seq-len = 148880 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138450-147975 bp Zoom in on locus 1 x37 Gene: cd09643:cas9 Type: Subtype-II-C Location: 138450-142760 bp Gene: unk Type: unknown Location: 142776-143300 bp Gene: unk Type: unknown Location: 143367-143675 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 143795-144727 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 144731-145063 bp CRISPR array Location: 145172-147975 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 145172-147975 bp Num of repeats: 37 Spacers: s1-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145172-147975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_480060_cov_18.724067

⇒Summary: seq-len = 480060 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353604-357217 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 353604-354503 bp Gene: unk Type: unknown Location: 354500-355765 bp Gene: unk Type: unknown Location: 355773-356546 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 356549-357217 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)