CRISPRone

CRISPRone report for SRR9713379

♦ Seq 1: NODE_37_length_46134_cov_33.285944

⇒Summary: seq-len = 46134 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485-14494 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 485-1216 bp Gene: unk Type: unknown Location: 1234-1860 bp Gene: unk Type: unknown Location: 1836-2615 bp Gene: cash17:cash17 Type: Type- Location: 2660-4087 bp Gene: unk Type: unknown Location: 4084-4563 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 4577-5986 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5991-7793 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 7786-8925 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8945-9784 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 9797-10207 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 10204-11154 bp Gene: cd09634:cas1 Type: universal Location: 11174-13444 bp CRISPR array Location: 14176-14494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 14176-14494 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14176-14494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_23_length_84531_cov_30.183283

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75212-83626 bp Zoom in on locus 1 x21 antiRepeat Location: 75212-75257 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 75325-79635 bp Gene: unk Type: unknown Location: 79651-80175 bp Gene: unk Type: unknown Location: 80242-80550 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 80670-81602 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 81606-81938 bp CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82047-83626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_4_length_264280_cov_31.338310

⇒Summary: seq-len = 264280 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127233-130846 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127233-128132 bp Gene: unk Type: unknown Location: 128129-129394 bp Gene: unk Type: unknown Location: 129402-130175 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130178-130846 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)