CRISPRone

CRISPRone report for SRR9713380

♦ Seq 1: NODE_159_length_11138_cov_3.596138

⇒Summary: seq-len = 11138 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-6973 bp Zoom in on locus 1 x2 CRISPR array Location: 16-138 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 16-138 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 247-579 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 583-1515 bp Gene: unk Type: unknown Location: 1635-1943 bp Gene: unk Type: unknown Location: 2010-2534 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2550-6860 bp antiRepeat Location: 6928-6973 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16-138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_463_length_238_cov_1.989071

⇒Summary: seq-len = 238 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-242 bp Zoom in on locus 1 x4 CRISPR array Location: 0-242 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-242 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_9_length_65013_cov_3.159149

⇒Summary: seq-len = 65013 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30370-33983 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 30370-31038 bp Gene: unk Type: unknown Location: 31041-31814 bp Gene: unk Type: unknown Location: 31822-33087 bp Gene: pfam13280:WYL Type: other Location: 33084-33983 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_17_length_47858_cov_3.573500

⇒Summary: seq-len = 47858 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485-14423 bp Zoom in on locus 1 x4 Gene: cls000004:cas6 Type: other Location: 485-1216 bp Gene: unk Type: unknown Location: 1234-1860 bp Gene: unk Type: unknown Location: 1836-2615 bp Gene: cash17:cash17 Type: Type- Location: 2660-4087 bp Gene: unk Type: unknown Location: 4084-4563 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 4577-5986 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5991-7793 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 7786-8925 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8945-9784 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 9797-10207 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 10204-11154 bp Gene: cd09634:cas1 Type: universal Location: 11174-13444 bp CRISPR array Location: 14176-14423 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 14176-14423 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14176-14423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)