CRISPRone

CRISPRone report for SRR9713381

♦ Seq 1: NODE_25_length_84531_cov_18.466357

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-9207 bp Zoom in on locus 1 x21 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2594-2926 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2930-3862 bp Gene: unk Type: unknown Location: 3982-4290 bp Gene: unk Type: unknown Location: 4357-4881 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4897-9207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_264295_cov_18.042268

⇒Summary: seq-len = 264295 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127248-130861 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127248-128147 bp Gene: unk Type: unknown Location: 128144-129409 bp Gene: unk Type: unknown Location: 129417-130190 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130193-130861 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_36_length_46134_cov_18.786150

⇒Summary: seq-len = 46134 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485-14494 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 485-1216 bp Gene: unk Type: unknown Location: 1234-1860 bp Gene: unk Type: unknown Location: 1836-2615 bp Gene: cash17:cash17 Type: Type- Location: 2660-4087 bp Gene: unk Type: unknown Location: 4084-4563 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 4577-5986 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5991-7793 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 7786-8925 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8945-9784 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 9797-10207 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 10204-11154 bp Gene: cd09634:cas1 Type: universal Location: 11174-13444 bp CRISPR array Location: 14176-14494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 14176-14494 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14176-14494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)