CRISPRone

CRISPRone report for SRR9713383

♦ Seq 1: NODE_1_length_577515_cov_9.169695

⇒Summary: seq-len = 577515 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31642-45587 bp Zoom in on locus 1 x5 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 32407-32697 bp Gene: cd09634:cas1 Type: universal Location: 32691-34961 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34981-35925 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35928-36338 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36351-37190 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37210-38349 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38342-40144 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40149-41558 bp Gene: unk Type: unknown Location: 41572-42051 bp Gene: cash17:cash17 Type: Type- Location: 42048-43475 bp Gene: unk Type: unknown Location: 43520-44299 bp Gene: unk Type: unknown Location: 44275-44901 bp Gene: cls000004:cas6 Type: other Location: 44919-45587 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31642-31959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_21_length_83877_cov_9.471082

⇒Summary: seq-len = 83877 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 908-9321 bp Zoom in on locus 1 x21 CRISPR array Location: 908-2486 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 908-2486 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2595-2927 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2931-3863 bp Gene: unk Type: unknown Location: 3983-4291 bp Gene: unk Type: unknown Location: 4358-4882 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4898-9208 bp antiRepeat Location: 9276-9321 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 908-2486 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_2_length_403073_cov_9.235751

⇒Summary: seq-len = 403073 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133553-137166 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 133553-134221 bp Gene: unk Type: unknown Location: 134224-134997 bp Gene: unk Type: unknown Location: 135005-136270 bp Gene: pfam13280:WYL Type: other Location: 136267-137166 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)