CRISPRone

CRISPRone report for SRR9713386

♦ Seq 1: NODE_6_length_223367_cov_11.655621

⇒Summary: seq-len = 223367 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214064-222405 bp Zoom in on locus 1 x20 antiRepeat Location: 214064-214109 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 214177-218487 bp Gene: unk Type: unknown Location: 218503-219027 bp Gene: unk Type: unknown Location: 219094-219402 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 219522-220454 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 220458-220790 bp CRISPR array Location: 220899-222405 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 220899-222405 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 220899-222405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_399673_cov_10.731446

⇒Summary: seq-len = 399673 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123531-127144 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 123531-124199 bp Gene: unk Type: unknown Location: 124202-124975 bp Gene: unk Type: unknown Location: 124983-126248 bp Gene: pfam13280:WYL Type: other Location: 126245-127144 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_5_length_281756_cov_9.877061

⇒Summary: seq-len = 281756 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89275-98993 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 89275-95415 bp Gene: pfam13280:WYL Type: other Location: 95454-96464 bp Gene: unk Type: unknown Location: 97230-97406 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 97743-98993 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)