CRISPRone

CRISPRone report for SRR9713400

♦ Seq 1: NODE_31_length_59812_cov_7.825627

⇒Summary: seq-len = 59812 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46122-49735 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46122-46790 bp Gene: unk Type: unknown Location: 46793-47566 bp Gene: unk Type: unknown Location: 47574-48839 bp Gene: pfam13280:WYL Type: other Location: 48836-49735 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_55_length_33669_cov_8.017255

⇒Summary: seq-len = 33669 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19298-33663 bp Zoom in on locus 1 x10 Gene: cls000004:cas6 Type: other Location: 19298-20029 bp Gene: unk Type: unknown Location: 20047-20673 bp Gene: unk Type: unknown Location: 20649-21428 bp Gene: cash17:cash17 Type: Type- Location: 21473-22900 bp Gene: unk Type: unknown Location: 22897-23376 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 23390-24799 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 24804-26606 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 26599-27738 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 27758-28597 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 28610-29020 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 29017-29967 bp Gene: cd09634:cas1 Type: universal Location: 29987-32257 bp CRISPR array Location: 32989-33663 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 32989-33663 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32989-33663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_103839_cov_7.280698

⇒Summary: seq-len = 103839 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-248 bp Zoom in on locus 1 x4 CRISPR array Location: 1-248 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-248 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)