CRISPRone

CRISPRone report for SRR9713403

♦ Seq 1: NODE_9_length_134770_cov_8.485291

⇒Summary: seq-len = 134770 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-317 bp Zoom in on locus 1 x5 CRISPR array Location: 1-317 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1-317 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_109089_cov_9.385439

⇒Summary: seq-len = 109089 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94713-109078 bp Zoom in on locus 1 x10 Gene: cls000004:cas6 Type: other Location: 94713-95444 bp Gene: unk Type: unknown Location: 95462-96088 bp Gene: unk Type: unknown Location: 96064-96843 bp Gene: cash17:cash17 Type: Type- Location: 96888-98315 bp Gene: unk Type: unknown Location: 98312-98791 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98805-100214 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100219-102021 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102014-103153 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103173-104012 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104025-104435 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104432-105382 bp Gene: cd09634:cas1 Type: universal Location: 105402-107672 bp Gene: cd09725:cas2 Type: universal Location: 107666-107956 bp CRISPR array Location: 108404-109078 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 108404-109078 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108404-109078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_7_length_137046_cov_10.113854

⇒Summary: seq-len = 137046 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123356-126969 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 123356-124024 bp Gene: unk Type: unknown Location: 124027-124800 bp Gene: unk Type: unknown Location: 124808-126073 bp Gene: pfam13280:WYL Type: other Location: 126070-126969 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)