CRISPRone

CRISPRone report for SRR9713404

♦ Seq 1: NODE_8_length_157554_cov_20.848209

⇒Summary: seq-len = 157554 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143864-147477 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 143864-144532 bp Gene: unk Type: unknown Location: 144535-145308 bp Gene: unk Type: unknown Location: 145316-146581 bp Gene: pfam13280:WYL Type: other Location: 146578-147477 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_282801_cov_17.465092

⇒Summary: seq-len = 282801 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268347-282781 bp Zoom in on locus 1 x11 Gene: cls000004:cas6 Type: other Location: 268347-269078 bp Gene: unk Type: unknown Location: 269096-269722 bp Gene: unk Type: unknown Location: 269698-270477 bp Gene: cash17:cash17 Type: Type- Location: 270522-271949 bp Gene: unk Type: unknown Location: 271946-272425 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 272439-273848 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 273853-275655 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 275648-276787 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 276807-277646 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 277659-278069 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 278066-279016 bp Gene: cd09634:cas1 Type: universal Location: 279036-281306 bp Gene: cd09725:cas2 Type: universal Location: 281300-281590 bp CRISPR array Location: 282038-282781 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 282038-282781 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 282038-282781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_52_length_31876_cov_18.318815

⇒Summary: seq-len = 31876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-31879 bp Zoom in on locus 1 x4 CRISPR array Location: 31633-31879 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 31633-31879 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-31879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)