CRISPRone

CRISPRone report for SRR9713405

♦ Seq 1: NODE_7_length_157550_cov_9.604286

⇒Summary: seq-len = 157550 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143864-147477 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 143864-144532 bp Gene: unk Type: unknown Location: 144535-145308 bp Gene: unk Type: unknown Location: 145316-146581 bp Gene: pfam13280:WYL Type: other Location: 146578-147477 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_109166_cov_8.822154

⇒Summary: seq-len = 109166 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28-14398 bp Zoom in on locus 1 x11 CRISPR array Location: 28-770 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 28-770 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09634:cas1 Type: universal Location: 1502-3772 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3792-4742 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4739-5149 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 5162-6001 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 6021-7160 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 7153-8955 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8960-10369 bp Gene: unk Type: unknown Location: 10383-10862 bp Gene: cash17:cash17 Type: Type- Location: 10859-12286 bp Gene: unk Type: unknown Location: 12331-13110 bp Gene: unk Type: unknown Location: 13086-13712 bp Gene: cls000004:cas6 Type: other Location: 13730-14398 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28-770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_55_length_31868_cov_8.659322

⇒Summary: seq-len = 31868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31638-31884 bp Zoom in on locus 1 x4 CRISPR array Location: 31638-31884 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 31638-31884 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31638-31884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)