CRISPRone

CRISPRone report for SRR9713406

♦ Seq 1: NODE_227_length_544_cov_5.572597

⇒Summary: seq-len = 544 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-538 bp Zoom in on locus 1 x8 CRISPR array Location: 9-538 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 9-538 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_11_length_84971_cov_5.331351

⇒Summary: seq-len = 84971 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-13728 bp Zoom in on locus 1 x2 CRISPR array Location: 0-100 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-100 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09634:cas1 Type: universal Location: 832-3102 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3122-4072 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4069-4479 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4492-5331 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5351-6490 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6483-8285 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8290-9699 bp Gene: unk Type: unknown Location: 9713-10192 bp Gene: cash17:cash17 Type: Type- Location: 10189-11616 bp Gene: unk Type: unknown Location: 11661-12440 bp Gene: unk Type: unknown Location: 12416-13042 bp Gene: cls000004:cas6 Type: other Location: 13060-13728 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_58_length_31875_cov_5.352860

⇒Summary: seq-len = 31875 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-31879 bp Zoom in on locus 1 x4 CRISPR array Location: 31633-31879 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 31633-31879 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-31879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)