CRISPRone

CRISPRone report for SRR9713408

♦ Seq 1: NODE_2_length_451670_cov_13.072205

⇒Summary: seq-len = 451670 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201655-203972 bp 2 Locus 2: 341967-356897 bp Zoom in on locus 1 x9 Zoom in on locus 2 x19 Gene: cd09652:cas6 Type: other Location: 201655-202326 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202338-202718 bp Gene: cd09722:cas1 Type: universal Location: 202711-202950 bp Gene: cd09725:cas2 Type: universal Location: 202953-203216 bp CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 341967-343270 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 341967-343270 bp Num of repeats: 19 Spacers: s9-s26 Gene: cd09725:cas2 Type: universal Location: 343717-344007 bp Gene: cd09634:cas1 Type: universal Location: 344001-346271 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 346291-347235 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 347238-347648 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 347661-348500 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 348520-349659 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 349652-351454 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 351459-352868 bp Gene: unk Type: unknown Location: 352882-353361 bp Gene: cash17:cash17 Type: Type- Location: 353358-354785 bp Gene: unk Type: unknown Location: 354830-355609 bp Gene: unk Type: unknown Location: 355585-356211 bp Gene: cls000004:cas6 Type: other Location: 356229-356897 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203429-203972 bp]: array | spacers
           [Locus range 341967-343270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_15.871496

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_10_length_188349_cov_21.431533

⇒Summary: seq-len = 188349 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 610-8719 bp Zoom in on locus 1 x17 CRISPR array Location: 610-1884 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 610-1884 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1993-2325 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2329-3261 bp Gene: unk Type: unknown Location: 3381-3689 bp Gene: unk Type: unknown Location: 3756-4280 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4296-8606 bp antiRepeat Location: 8674-8719 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 610-1884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)