CRISPRone

CRISPRone report for SRR9713410

♦ Seq 1: NODE_1_length_506712_cov_15.875519

⇒Summary: seq-len = 506712 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 422816-426429 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 422816-423715 bp Gene: unk Type: unknown Location: 423712-424977 bp Gene: unk Type: unknown Location: 424985-425758 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425761-426429 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_310365_cov_12.865441

⇒Summary: seq-len = 310365 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106393-108709 bp Zoom in on locus 1 x9 CRISPR array Location: 106393-106935 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106393-106935 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107148-107411 bp Gene: cd09722:cas1 Type: universal Location: 107414-107653 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107646-108026 bp Gene: cd09652:cas6 Type: other Location: 108038-108709 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106393-106935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_141344_cov_13.429977

⇒Summary: seq-len = 141344 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94705-109699 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94705-95436 bp Gene: unk Type: unknown Location: 95454-96080 bp Gene: unk Type: unknown Location: 96056-96835 bp Gene: cash17:cash17 Type: Type- Location: 96880-98307 bp Gene: unk Type: unknown Location: 98304-98783 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98797-100206 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100211-102013 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102006-103145 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103165-104004 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104017-104427 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104424-105374 bp Gene: cd09634:cas1 Type: universal Location: 105394-107664 bp Gene: cd09725:cas2 Type: universal Location: 107658-107948 bp CRISPR array Location: 108395-109699 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108395-109699 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108395-109699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_11_length_153198_cov_21.330606

⇒Summary: seq-len = 153198 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)