CRISPRone

CRISPRone report for SRR9713411

♦ Seq 1: NODE_83_length_876_cov_11.876979

⇒Summary: seq-len = 876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 677-800 bp Zoom in on locus 1 x2 CRISPR array Location: 677-800 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 677-800 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 677-800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_142_length_124_cov_9.782609

⇒Summary: seq-len = 124 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-124 bp Zoom in on locus 1 x2 CRISPR array Location: 1-124 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-124 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_85_length_755_cov_6.991429

⇒Summary: seq-len = 755 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-747 bp Zoom in on locus 1 x10 CRISPR array Location: 9-747 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 9-747 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_13_length_118569_cov_9.345039

⇒Summary: seq-len = 118569 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-7658 bp Zoom in on locus 1 x11 CRISPR array Location: 9-823 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 9-823 bp Num of repeats: 11 Spacers: s1-s10 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 932-1264 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 1268-2200 bp Gene: unk Type: unknown Location: 2320-2628 bp Gene: unk Type: unknown Location: 2695-3219 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3235-7545 bp antiRepeat Location: 7613-7658 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9-823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_11_length_128261_cov_5.698665

⇒Summary: seq-len = 128261 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106328-108645 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 106328-106999 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107011-107391 bp Gene: cd09722:cas1 Type: universal Location: 107384-107623 bp Gene: cd09725:cas2 Type: universal Location: 107626-107889 bp CRISPR array Location: 108102-108645 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 108102-108645 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108102-108645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NODE_1_length_497963_cov_6.925267

⇒Summary: seq-len = 497963 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71444-75057 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 71444-72112 bp Gene: unk Type: unknown Location: 72115-72888 bp Gene: unk Type: unknown Location: 72896-74161 bp Gene: pfam13280:WYL Type: other Location: 74158-75057 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: NODE_19_length_88900_cov_6.232450

⇒Summary: seq-len = 88900 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31743-46673 bp Zoom in on locus 1 x19 CRISPR array Location: 31743-33046 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 31743-33046 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 33493-33783 bp Gene: cd09634:cas1 Type: universal Location: 33777-36047 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36067-37017 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37014-37424 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37437-38276 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38296-39435 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39428-41230 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41235-42644 bp Gene: unk Type: unknown Location: 42658-43137 bp Gene: cash17:cash17 Type: Type- Location: 43134-44561 bp Gene: unk Type: unknown Location: 44606-45385 bp Gene: unk Type: unknown Location: 45361-45987 bp Gene: cls000004:cas6 Type: other Location: 46005-46673 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31743-33046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)