CRISPRone

CRISPRone report for SRR9713415

♦ Seq 1: NODE_23_length_80894_cov_24.574203

⇒Summary: seq-len = 80894 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66454-80875 bp Zoom in on locus 1 x11 Gene: cls000004:cas6 Type: other Location: 66454-67185 bp Gene: unk Type: unknown Location: 67203-67829 bp Gene: unk Type: unknown Location: 67805-68584 bp Gene: cash17:cash17 Type: Type- Location: 68629-70056 bp Gene: unk Type: unknown Location: 70053-70532 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 70546-71955 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 71960-73762 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 73755-74894 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 74914-75753 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 75766-76176 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 76173-77123 bp Gene: cd09634:cas1 Type: universal Location: 77143-79413 bp Gene: cd09725:cas2 Type: universal Location: 79407-79697 bp CRISPR array Location: 80145-80875 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 80145-80875 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80145-80875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_444843_cov_31.161162

⇒Summary: seq-len = 444843 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99123-102736 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 99123-99791 bp Gene: unk Type: unknown Location: 99794-100567 bp Gene: unk Type: unknown Location: 100575-101840 bp Gene: pfam13280:WYL Type: other Location: 101837-102736 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_35_length_32189_cov_31.208564

⇒Summary: seq-len = 32189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18-547 bp Zoom in on locus 1 x8 CRISPR array Location: 18-547 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18-547 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18-547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)