CRISPRone

CRISPRone report for SRR9713450

♦ Seq 1: NODE_2_length_383627_cov_8.282927

⇒Summary: seq-len = 383627 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290179-293789 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 290179-290847 bp Gene: unk Type: unknown Location: 290850-291620 bp Gene: unk Type: unknown Location: 291628-292893 bp Gene: pfam13280:WYL Type: other Location: 292890-293789 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_15_length_137879_cov_7.913665

⇒Summary: seq-len = 137879 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29262-31646 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 29262-29933 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 29945-30325 bp Gene: cd09722:cas1 Type: universal Location: 30318-30557 bp Gene: cd09725:cas2 Type: universal Location: 30560-30823 bp CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31036-31646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_164976_cov_12.403781

⇒Summary: seq-len = 164976 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 390-8346 bp Zoom in on locus 1 x15 CRISPR array Location: 390-1511 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 390-1511 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1620-1952 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 1956-2888 bp Gene: unk Type: unknown Location: 3008-3316 bp Gene: unk Type: unknown Location: 3383-3907 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3923-8233 bp antiRepeat Location: 8301-8346 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 390-1511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_4_length_205607_cov_7.725534

⇒Summary: seq-len = 205607 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)