CRISPRone

CRISPRone report for SRR9713454

♦ Seq 1: NODE_10_length_167749_cov_22.324204

⇒Summary: seq-len = 167749 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 390-8387 bp Zoom in on locus 1 x17 CRISPR array Location: 390-1665 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 390-1665 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1774-2106 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2110-3042 bp Gene: unk Type: unknown Location: 3162-3470 bp Gene: unk Type: unknown Location: 3537-4061 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4077-8387 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 390-1665 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_13_length_137882_cov_14.293585

⇒Summary: seq-len = 137882 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106238-108621 bp Zoom in on locus 1 x10 CRISPR array Location: 106238-106847 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 106238-106847 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 107060-107323 bp Gene: cd09722:cas1 Type: universal Location: 107326-107565 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107558-107938 bp Gene: cd09652:cas6 Type: other Location: 107950-108621 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106238-106847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_411869_cov_14.011605

⇒Summary: seq-len = 411869 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 276096-286225 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 276096-282236 bp Gene: pfam13280:WYL Type: other Location: 282275-283285 bp Gene: unk Type: unknown Location: 284051-284227 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 284564-286225 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_4_length_383626_cov_15.074881

⇒Summary: seq-len = 383626 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290178-293788 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 290178-290846 bp Gene: unk Type: unknown Location: 290849-291619 bp Gene: unk Type: unknown Location: 291627-292892 bp Gene: pfam13280:WYL Type: other Location: 292889-293788 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)