CRISPRone

CRISPRone report for SRR9713455

♦ Seq 1: NODE_16_length_137974_cov_11.753167

⇒Summary: seq-len = 137974 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106330-108713 bp Zoom in on locus 1 x10 CRISPR array Location: 106330-106939 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 106330-106939 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 107152-107415 bp Gene: cd09722:cas1 Type: universal Location: 107418-107657 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107650-108030 bp Gene: cd09652:cas6 Type: other Location: 108042-108713 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106330-106939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_167749_cov_18.324597

⇒Summary: seq-len = 167749 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159363-167361 bp Zoom in on locus 1 x17 Gene: cd09643:cas9 Type: Subtype-II-C Location: 159363-163673 bp Gene: unk Type: unknown Location: 163689-164213 bp Gene: unk Type: unknown Location: 164280-164588 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 164708-165640 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 165644-165976 bp CRISPR array Location: 166085-167361 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 166085-167361 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166085-167361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_2_length_383626_cov_12.403555

⇒Summary: seq-len = 383626 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89839-93449 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 89839-90738 bp Gene: unk Type: unknown Location: 90735-92000 bp Gene: unk Type: unknown Location: 92008-92778 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 92781-93449 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_8_length_238306_cov_11.553744

⇒Summary: seq-len = 238306 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102533-112662 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 102533-108673 bp Gene: pfam13280:WYL Type: other Location: 108712-109722 bp Gene: unk Type: unknown Location: 110488-110664 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 111001-112662 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)