CRISPRone

CRISPRone report for SRR9713457

♦ Seq 1: NODE_4_length_383626_cov_15.195098

⇒Summary: seq-len = 383626 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290178-293788 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 290178-290846 bp Gene: unk Type: unknown Location: 290849-291619 bp Gene: unk Type: unknown Location: 291627-292892 bp Gene: pfam13280:WYL Type: other Location: 292889-293788 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_10_length_167644_cov_22.990680

⇒Summary: seq-len = 167644 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8395 bp Zoom in on locus 1 x17 CRISPR array Location: 285-1560 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 285-1560 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1669-2001 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2005-2937 bp Gene: unk Type: unknown Location: 3057-3365 bp Gene: unk Type: unknown Location: 3432-3956 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3972-8282 bp antiRepeat Location: 8350-8395 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_411943_cov_14.129394

⇒Summary: seq-len = 411943 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 276170-286299 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 276170-282310 bp Gene: pfam13280:WYL Type: other Location: 282349-283359 bp Gene: unk Type: unknown Location: 284125-284301 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 284638-286299 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_13_length_137879_cov_14.198057

⇒Summary: seq-len = 137879 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106235-108618 bp Zoom in on locus 1 x10 CRISPR array Location: 106235-106844 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 106235-106844 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 107057-107320 bp Gene: cd09722:cas1 Type: universal Location: 107323-107562 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107555-107935 bp Gene: cd09652:cas6 Type: other Location: 107947-108618 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106235-106844 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)