CRISPRone

CRISPRone report for SRR9713458

♦ Seq 1: NODE_14_length_137879_cov_11.896919

⇒Summary: seq-len = 137879 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29262-31646 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 29262-29933 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 29945-30325 bp Gene: cd09722:cas1 Type: universal Location: 30318-30557 bp Gene: cd09725:cas2 Type: universal Location: 30560-30823 bp CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31036-31646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_383626_cov_12.492420

⇒Summary: seq-len = 383626 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89839-93449 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 89839-90738 bp Gene: unk Type: unknown Location: 90735-92000 bp Gene: unk Type: unknown Location: 92008-92778 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 92781-93449 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_2_length_411831_cov_11.743292

⇒Summary: seq-len = 411831 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_11_length_165303_cov_18.700008

⇒Summary: seq-len = 165303 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156804-164915 bp Zoom in on locus 1 x17 antiRepeat Location: 156804-156849 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 156917-161227 bp Gene: unk Type: unknown Location: 161243-161767 bp Gene: unk Type: unknown Location: 161834-162142 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 162262-163194 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 163198-163530 bp CRISPR array Location: 163639-164915 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 163639-164915 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 163639-164915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)