CRISPRone

CRISPRone report for SRR9713467

♦ Seq 1: NODE_11_length_153645_cov_6.333668

⇒Summary: seq-len = 153645 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145818-152817 bp Zoom in on locus 1 x4 Gene: cd09643:cas9 Type: Subtype-II-C Location: 145818-150128 bp Gene: unk Type: unknown Location: 150144-150668 bp Gene: unk Type: unknown Location: 150735-151043 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 151163-152095 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 152099-152431 bp CRISPR array Location: 152540-152817 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 152540-152817 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 152540-152817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_213464_cov_5.368138

⇒Summary: seq-len = 213464 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123307-133025 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 123307-124557 bp Gene: unk Type: unknown Location: 124592-124753 bp Gene: unk Type: unknown Location: 124894-125070 bp Gene: pfam13280:WYL Type: other Location: 125836-126846 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 126885-133025 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_70_length_751_cov_5.306034

⇒Summary: seq-len = 751 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-743 bp Zoom in on locus 1 x10 CRISPR array Location: 6-743 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 6-743 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6-743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_76_length_382_cov_4.238532

⇒Summary: seq-len = 382 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-369 bp Zoom in on locus 1 x5 CRISPR array Location: 14-369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 14-369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_6_length_185073_cov_5.757905

⇒Summary: seq-len = 185073 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46516-50129 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46516-47184 bp Gene: unk Type: unknown Location: 47187-47960 bp Gene: unk Type: unknown Location: 47968-49233 bp Gene: pfam13280:WYL Type: other Location: 49230-50129 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)