CRISPRone

CRISPRone report for SRR9713470

♦ Seq 1: NODE_4_length_399322_cov_9.881823

⇒Summary: seq-len = 399322 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123180-126793 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 123180-123848 bp Gene: unk Type: unknown Location: 123851-124624 bp Gene: unk Type: unknown Location: 124632-125897 bp Gene: pfam13280:WYL Type: other Location: 125894-126793 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_7_length_228552_cov_9.719839

⇒Summary: seq-len = 228552 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 986-9326 bp Zoom in on locus 1 x20 CRISPR array Location: 986-2491 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 986-2491 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2600-2932 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2936-3868 bp Gene: unk Type: unknown Location: 3988-4296 bp Gene: unk Type: unknown Location: 4363-4887 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4903-9213 bp antiRepeat Location: 9281-9326 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 986-2491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_645840_cov_9.271974

⇒Summary: seq-len = 645840 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182764-192482 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 182764-184014 bp Gene: unk Type: unknown Location: 184049-184210 bp Gene: unk Type: unknown Location: 184351-184527 bp Gene: pfam13280:WYL Type: other Location: 185293-186303 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 186342-192482 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)