CRISPRone

CRISPRone report for SRR9713473

♦ Seq 1: NODE_7_length_223290_cov_14.302851

⇒Summary: seq-len = 223290 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214064-222328 bp Zoom in on locus 1 x19 antiRepeat Location: 214064-214109 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 214177-218487 bp Gene: unk Type: unknown Location: 218503-219027 bp Gene: unk Type: unknown Location: 219094-219402 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 219522-220454 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 220458-220790 bp CRISPR array Location: 220899-222328 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 220899-222328 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 220899-222328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_645840_cov_12.619624

⇒Summary: seq-len = 645840 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182764-192482 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 182764-184014 bp Gene: unk Type: unknown Location: 184049-184210 bp Gene: unk Type: unknown Location: 184351-184527 bp Gene: pfam13280:WYL Type: other Location: 185293-186303 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 186342-192482 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_399673_cov_13.134581

⇒Summary: seq-len = 399673 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123531-127144 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 123531-124199 bp Gene: unk Type: unknown Location: 124202-124975 bp Gene: unk Type: unknown Location: 124983-126248 bp Gene: pfam13280:WYL Type: other Location: 126245-127144 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)