CRISPRone

CRISPRone report for SRR9713489

♦ Seq 1: NODE_2_length_461368_cov_7.873320

⇒Summary: seq-len = 461368 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80767-84380 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80767-81435 bp Gene: unk Type: unknown Location: 81438-82211 bp Gene: unk Type: unknown Location: 82219-83484 bp Gene: pfam13280:WYL Type: other Location: 83481-84380 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_6_length_281883_cov_7.082536

⇒Summary: seq-len = 281883 bp; # of CRISPR array = 0; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268158-281401 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 268158-268889 bp Gene: unk Type: unknown Location: 268907-269533 bp Gene: unk Type: unknown Location: 269509-270288 bp Gene: cash17:cash17 Type: Type- Location: 270333-271760 bp Gene: unk Type: unknown Location: 271757-272236 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 272250-273659 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 273664-275466 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 275459-276598 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 276618-277457 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 277470-277880 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 277877-278827 bp Gene: cd09634:cas1 Type: universal Location: 278847-281117 bp Gene: cd09725:cas2 Type: universal Location: 281111-281401 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_39_length_32599_cov_7.248156

⇒Summary: seq-len = 32599 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-32587 bp Zoom in on locus 1 x14 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-32587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)