CRISPRone

CRISPRone report for SRR9713492

♦ Seq 1: NODE_3_length_310362_cov_22.605549

⇒Summary: seq-len = 310362 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_13_length_150027_cov_33.540561

⇒Summary: seq-len = 150027 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_9_length_228562_cov_25.042821

⇒Summary: seq-len = 228562 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144666-148279 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 144666-145565 bp Gene: unk Type: unknown Location: 145562-146827 bp Gene: unk Type: unknown Location: 146835-147608 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 147611-148279 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_2_length_317947_cov_21.433509

⇒Summary: seq-len = 317947 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 271313-286307 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 271313-272044 bp Gene: unk Type: unknown Location: 272062-272688 bp Gene: unk Type: unknown Location: 272664-273443 bp Gene: cash17:cash17 Type: Type- Location: 273488-274915 bp Gene: unk Type: unknown Location: 274912-275391 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 275405-276814 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 276819-278621 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 278614-279753 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 279773-280612 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 280625-281035 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 281032-281982 bp Gene: cd09634:cas1 Type: universal Location: 282002-284272 bp Gene: cd09725:cas2 Type: universal Location: 284266-284556 bp CRISPR array Location: 285003-286307 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 285003-286307 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285003-286307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)