CRISPRone

CRISPRone report for SRR9713494

♦ Seq 1: NODE_5_length_310360_cov_18.325683

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_21.345485

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80284-83897 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80284-80952 bp Gene: unk Type: unknown Location: 80955-81728 bp Gene: unk Type: unknown Location: 81736-83001 bp Gene: pfam13280:WYL Type: other Location: 82998-83897 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_20_length_70520_cov_17.353438

⇒Summary: seq-len = 70520 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23886-38880 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 23886-24617 bp Gene: unk Type: unknown Location: 24635-25261 bp Gene: unk Type: unknown Location: 25237-26016 bp Gene: cash17:cash17 Type: Type- Location: 26061-27488 bp Gene: unk Type: unknown Location: 27485-27964 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 27978-29387 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 29392-31194 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 31187-32326 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 32346-33185 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 33198-33608 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 33605-34555 bp Gene: cd09634:cas1 Type: universal Location: 34575-36845 bp Gene: cd09725:cas2 Type: universal Location: 36839-37129 bp CRISPR array Location: 37576-38880 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37576-38880 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37576-38880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_14_length_100138_cov_26.779733

⇒Summary: seq-len = 100138 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91071-99530 bp Zoom in on locus 1 x23 Gene: cd09643:cas9 Type: Subtype-II-C Location: 91071-95381 bp Gene: unk Type: unknown Location: 95397-95921 bp Gene: unk Type: unknown Location: 95988-96296 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 96416-97348 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 97352-97684 bp CRISPR array Location: 97793-99530 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 97793-99530 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97793-99530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)