CRISPRone

CRISPRone report for SRR9713495

♦ Seq 1: NODE_83_length_1664_cov_7.027346

⇒Summary: seq-len = 1664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 610-1656 bp Zoom in on locus 1 x14 CRISPR array Location: 610-1656 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 610-1656 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 610-1656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_6_length_223590_cov_5.607399

⇒Summary: seq-len = 223590 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201657-203974 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 201657-202328 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202340-202720 bp Gene: cd09722:cas1 Type: universal Location: 202713-202952 bp Gene: cd09725:cas2 Type: universal Location: 202955-203218 bp CRISPR array Location: 203431-203974 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203431-203974 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203431-203974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_128581_cov_5.804063

⇒Summary: seq-len = 128581 bp; # of CRISPR array = 1; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117861-128579 bp Zoom in on locus 1 x19 CRISPR array Location: 117861-119164 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 117861-119164 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 119611-119901 bp Gene: cd09634:cas1 Type: universal Location: 119895-122165 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 122185-123129 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 123132-123542 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 123555-124394 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 124414-125553 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 125546-127348 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 127353-128579 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 117861-119164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_2_length_333281_cov_6.483435

⇒Summary: seq-len = 333281 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249358-252971 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 249358-250257 bp Gene: unk Type: unknown Location: 250254-251519 bp Gene: unk Type: unknown Location: 251527-252300 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 252303-252971 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_16_length_98151_cov_8.453974

⇒Summary: seq-len = 98151 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 468-7194 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 468-800 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 804-1736 bp Gene: unk Type: unknown Location: 1856-2164 bp Gene: unk Type: unknown Location: 2231-2755 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2771-7081 bp antiRepeat Location: 7149-7194 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)