CRISPRone

CRISPRone report for SRR9713496

♦ Seq 1: NODE_11_length_152925_cov_17.406064

⇒Summary: seq-len = 152925 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143848-152420 bp Zoom in on locus 1 x23 antiRepeat Location: 143848-143893 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 143961-148271 bp Gene: unk Type: unknown Location: 148287-148811 bp Gene: unk Type: unknown Location: 148878-149186 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 149306-150238 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 150242-150574 bp CRISPR array Location: 150683-152420 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 150683-152420 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 150683-152420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_13.239417

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_141351_cov_12.068487

⇒Summary: seq-len = 141351 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94717-109711 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94717-95448 bp Gene: unk Type: unknown Location: 95466-96092 bp Gene: unk Type: unknown Location: 96068-96847 bp Gene: cash17:cash17 Type: Type- Location: 96892-98319 bp Gene: unk Type: unknown Location: 98316-98795 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98809-100218 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100223-102025 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102018-103157 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103177-104016 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104029-104439 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104436-105386 bp Gene: cd09634:cas1 Type: universal Location: 105406-107676 bp Gene: cd09725:cas2 Type: universal Location: 107670-107960 bp CRISPR array Location: 108407-109711 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108407-109711 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108407-109711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_4_length_310360_cov_11.423664

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)