CRISPRone

CRISPRone report for SRR9713498

♦ Seq 1: NODE_5_length_310360_cov_14.001834

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_141344_cov_14.752635

⇒Summary: seq-len = 141344 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94710-109704 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94710-95441 bp Gene: unk Type: unknown Location: 95459-96085 bp Gene: unk Type: unknown Location: 96061-96840 bp Gene: cash17:cash17 Type: Type- Location: 96885-98312 bp Gene: unk Type: unknown Location: 98309-98788 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98802-100211 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100216-102018 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102011-103150 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103170-104009 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104022-104432 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104429-105379 bp Gene: cd09634:cas1 Type: universal Location: 105399-107669 bp Gene: cd09725:cas2 Type: universal Location: 107663-107953 bp CRISPR array Location: 108400-109704 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108400-109704 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108400-109704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_11_length_152882_cov_21.190130

⇒Summary: seq-len = 152882 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_1_length_506911_cov_16.482350

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)