CRISPRone

CRISPRone report for SRR9713499

♦ Seq 1: NODE_7_length_223588_cov_9.081509

⇒Summary: seq-len = 223588 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201655-203972 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 201655-202326 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202338-202718 bp Gene: cd09722:cas1 Type: universal Location: 202711-202950 bp Gene: cd09725:cas2 Type: universal Location: 202953-203216 bp CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203429-203972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_10.802591

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_13_length_141340_cov_9.744870

⇒Summary: seq-len = 141340 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94706-109700 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94706-95437 bp Gene: unk Type: unknown Location: 95455-96081 bp Gene: unk Type: unknown Location: 96057-96836 bp Gene: cash17:cash17 Type: Type- Location: 96881-98308 bp Gene: unk Type: unknown Location: 98305-98784 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98798-100207 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100212-102014 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102007-103146 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103166-104005 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104018-104428 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104425-105375 bp Gene: cd09634:cas1 Type: universal Location: 105395-107665 bp Gene: cd09725:cas2 Type: universal Location: 107659-107949 bp CRISPR array Location: 108396-109700 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108396-109700 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108396-109700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_12_length_152703_cov_13.743796

⇒Summary: seq-len = 152703 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)