CRISPRone

CRISPRone report for SRR9713501

♦ Seq 1: NODE_23_length_70520_cov_19.438828

⇒Summary: seq-len = 70520 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23886-38880 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 23886-24617 bp Gene: unk Type: unknown Location: 24635-25261 bp Gene: unk Type: unknown Location: 25237-26016 bp Gene: cash17:cash17 Type: Type- Location: 26061-27488 bp Gene: unk Type: unknown Location: 27485-27964 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 27978-29387 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 29392-31194 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 31187-32326 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 32346-33185 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 33198-33608 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 33605-34555 bp Gene: cd09634:cas1 Type: universal Location: 34575-36845 bp Gene: cd09725:cas2 Type: universal Location: 36839-37129 bp CRISPR array Location: 37576-38880 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37576-38880 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37576-38880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_23.808926

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_10_length_151816_cov_29.616805

⇒Summary: seq-len = 151816 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8394 bp Zoom in on locus 1 x17 CRISPR array Location: 285-1559 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 285-1559 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1668-2000 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2004-2936 bp Gene: unk Type: unknown Location: 3056-3364 bp Gene: unk Type: unknown Location: 3431-3955 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3971-8281 bp antiRepeat Location: 8349-8394 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1559 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_7_length_223588_cov_20.699472

⇒Summary: seq-len = 223588 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19618-21934 bp Zoom in on locus 1 x9 CRISPR array Location: 19618-20160 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 19618-20160 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 20373-20636 bp Gene: cd09722:cas1 Type: universal Location: 20639-20878 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 20871-21251 bp Gene: cd09652:cas6 Type: other Location: 21263-21934 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19618-20160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)