CRISPRone

CRISPRone report for SRR9713503

♦ Seq 1: NODE_6_length_272921_cov_15.603846

⇒Summary: seq-len = 272921 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182764-192482 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 182764-184014 bp Gene: unk Type: unknown Location: 184049-184210 bp Gene: unk Type: unknown Location: 184351-184527 bp Gene: pfam13280:WYL Type: other Location: 185293-186303 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 186342-192482 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_8_length_221182_cov_17.992434

⇒Summary: seq-len = 221182 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214064-220790 bp Zoom in on locus 1 antiRepeat Location: 214064-214109 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 214177-218487 bp Gene: unk Type: unknown Location: 218503-219027 bp Gene: unk Type: unknown Location: 219094-219402 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 219522-220454 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 220458-220790 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_82_length_284_cov_13.689956

⇒Summary: seq-len = 284 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8-285 bp Zoom in on locus 1 x4 CRISPR array Location: 8-285 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8-285 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8-285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_58_length_1128_cov_17.185461

⇒Summary: seq-len = 1128 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-823 bp Zoom in on locus 1 x11 CRISPR array Location: 9-823 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 9-823 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_2_length_399673_cov_16.431372

⇒Summary: seq-len = 399673 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272530-276143 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 272530-273429 bp Gene: unk Type: unknown Location: 273426-274691 bp Gene: unk Type: unknown Location: 274699-275472 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 275475-276143 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NODE_89_length_213_cov_12.234177

⇒Summary: seq-len = 213 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-209 bp Zoom in on locus 1 x3 CRISPR array Location: 9-209 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9-209 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)