CRISPRone

CRISPRone report for SRR9713506

♦ Seq 1: NODE_7_length_223367_cov_31.538032

⇒Summary: seq-len = 223367 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214064-222405 bp Zoom in on locus 1 x20 antiRepeat Location: 214064-214109 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 214177-218487 bp Gene: unk Type: unknown Location: 218503-219027 bp Gene: unk Type: unknown Location: 219094-219402 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 219522-220454 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 220458-220790 bp CRISPR array Location: 220899-222405 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 220899-222405 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 220899-222405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_645840_cov_27.195245

⇒Summary: seq-len = 645840 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 453359-463077 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 453359-459499 bp Gene: pfam13280:WYL Type: other Location: 459538-460548 bp Gene: unk Type: unknown Location: 461314-461490 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 461827-463077 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_5_length_327950_cov_28.694774

⇒Summary: seq-len = 327950 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200807-204420 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 200807-201706 bp Gene: unk Type: unknown Location: 201703-202968 bp Gene: unk Type: unknown Location: 202976-203749 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 203752-204420 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)