CRISPRone

CRISPRone report for SRR9713507

♦ Seq 1: NODE_7_length_218369_cov_13.309105

⇒Summary: seq-len = 218369 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 211601-218214 bp Zoom in on locus 1 Gene: cd09643:cas9 Type: Subtype-II-C Location: 211601-215911 bp Gene: unk Type: unknown Location: 215927-216451 bp Gene: unk Type: unknown Location: 216518-216826 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 216946-217878 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 217882-218214 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_399198_cov_12.225656

⇒Summary: seq-len = 399198 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272530-276143 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 272530-273429 bp Gene: unk Type: unknown Location: 273426-274691 bp Gene: unk Type: unknown Location: 274699-275472 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 275475-276143 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_281756_cov_11.510293

⇒Summary: seq-len = 281756 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89275-98993 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 89275-95415 bp Gene: pfam13280:WYL Type: other Location: 95454-96464 bp Gene: unk Type: unknown Location: 97230-97406 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 97743-98993 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_50_length_2847_cov_19.198782

⇒Summary: seq-len = 2847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-1515 bp Zoom in on locus 1 x20 CRISPR array Location: 9-1515 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 9-1515 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-1515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)