CRISPRone

CRISPRone report for SRR9713521

♦ Seq 1: NODE_13_length_148879_cov_18.165598

⇒Summary: seq-len = 148879 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-10543 bp Zoom in on locus 1 x37 CRISPR array Location: 907-3708 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 907-3708 bp Num of repeats: 37 Spacers: s1-s36 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3817-4149 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4153-5085 bp Gene: unk Type: unknown Location: 5205-5513 bp Gene: unk Type: unknown Location: 5580-6104 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 6120-10430 bp antiRepeat Location: 10498-10543 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-3708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_15_length_137643_cov_16.969220

⇒Summary: seq-len = 137643 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122499-126112 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 122499-123167 bp Gene: unk Type: unknown Location: 123170-123943 bp Gene: unk Type: unknown Location: 123951-125216 bp Gene: pfam13280:WYL Type: other Location: 125213-126112 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_14_length_141255_cov_17.118159

⇒Summary: seq-len = 141255 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36838 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)