CRISPRone

CRISPRone report for SRR9713522

♦ Seq 1: NODE_2_length_480060_cov_14.745105

⇒Summary: seq-len = 480060 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353604-357217 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 353604-354503 bp Gene: unk Type: unknown Location: 354500-355765 bp Gene: unk Type: unknown Location: 355773-356546 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 356549-357217 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_433049_cov_14.032319

⇒Summary: seq-len = 433049 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 33314-33604 bp Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36832 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_45_length_1880_cov_14.532055

⇒Summary: seq-len = 1880 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-1872 bp Zoom in on locus 1 x13 CRISPR array Location: 907-1872 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 907-1872 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 907-1872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_12_length_146832_cov_14.721693

⇒Summary: seq-len = 146832 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7-8383 bp Zoom in on locus 1 x22 CRISPR array Location: 7-1661 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 7-1661 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1770-2102 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2106-3038 bp Gene: unk Type: unknown Location: 3158-3466 bp Gene: unk Type: unknown Location: 3533-4057 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4073-8383 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7-1661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)