CRISPRone

CRISPRone report for SRR9713523

♦ Seq 1: NODE_15_length_148879_cov_12.852564

⇒Summary: seq-len = 148879 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138450-147974 bp Zoom in on locus 1 x37 Gene: cd09643:cas9 Type: Subtype-II-C Location: 138450-142760 bp Gene: unk Type: unknown Location: 142776-143300 bp Gene: unk Type: unknown Location: 143367-143675 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 143795-144727 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 144731-145063 bp CRISPR array Location: 145172-147974 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 145172-147974 bp Num of repeats: 37 Spacers: s1-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145172-147974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_16_length_137643_cov_12.239156

⇒Summary: seq-len = 137643 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122499-126112 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 122499-123167 bp Gene: unk Type: unknown Location: 123170-123943 bp Gene: unk Type: unknown Location: 123951-125216 bp Gene: pfam13280:WYL Type: other Location: 125213-126112 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_7_length_252364_cov_11.590106

⇒Summary: seq-len = 252364 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142754-157608 bp Zoom in on locus 1 x18 CRISPR array Location: 142754-143980 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 142754-143980 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 144428-144718 bp Gene: cd09634:cas1 Type: universal Location: 144712-146982 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 147002-147946 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 147949-148359 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 148372-149211 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 149231-150370 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 150363-152165 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 152170-153579 bp Gene: unk Type: unknown Location: 153593-154072 bp Gene: cash17:cash17 Type: Type- Location: 154069-155496 bp Gene: unk Type: unknown Location: 155541-156320 bp Gene: unk Type: unknown Location: 156296-156922 bp Gene: cls000004:cas6 Type: other Location: 156940-157608 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142754-143980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)