CRISPRone

CRISPRone report for SRR9713548

♦ Seq 1: NODE_165_length_706_cov_5.250384

⇒Summary: seq-len = 706 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102-704 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 102-704 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_181_length_390_cov_5.364179

⇒Summary: seq-len = 390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18-333 bp Zoom in on locus 1 x5 CRISPR array Location: 18-333 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18-333 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18-333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_95_length_14440_cov_6.451442

⇒Summary: seq-len = 14440 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-12297 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 1-1671 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1691-2635 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2638-3048 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3061-3900 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 3920-5059 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5052-6854 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 6859-8268 bp Gene: unk Type: unknown Location: 8282-8761 bp Gene: cash17:cash17 Type: Type- Location: 8758-10185 bp Gene: unk Type: unknown Location: 10230-11009 bp Gene: unk Type: unknown Location: 10985-11611 bp Gene: cls000004:cas6 Type: other Location: 11629-12297 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_60_length_32290_cov_7.240608

⇒Summary: seq-len = 32290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-659 bp Zoom in on locus 1 x10 CRISPR array Location: 0-659 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-659 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_65_length_30346_cov_8.122148

⇒Summary: seq-len = 30346 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10078-13691 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10078-10977 bp Gene: unk Type: unknown Location: 10974-12239 bp Gene: unk Type: unknown Location: 12247-13020 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13023-13691 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)