CRISPRone

CRISPRone report for SRR9713550

♦ Seq 1: NODE_197_length_6257_cov_3.386649

⇒Summary: seq-len = 6257 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6254 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 2-667 bp Gene: unk Type: unknown Location: 685-1311 bp Gene: unk Type: unknown Location: 1287-2066 bp Gene: cash17:cash17 Type: Type- Location: 2111-3538 bp Gene: unk Type: unknown Location: 3535-4014 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 4028-5437 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5442-6254 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_403_length_3787_cov_3.356913

⇒Summary: seq-len = 3787 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3557-3803 bp Zoom in on locus 1 x4 CRISPR array Location: 3557-3803 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3557-3803 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3557-3803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_628_length_2572_cov_2.935638

⇒Summary: seq-len = 2572 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2569 bp Zoom in on locus 1 x11 CRISPR array Location: 0-728 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-728 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09634:cas1 Type: universal Location: 1460-2569 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_275_length_4968_cov_3.688785

⇒Summary: seq-len = 4968 bp; # of CRISPR array = 0; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4965 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 2-574 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 594-1538 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 1541-1951 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1964-2803 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2823-3962 bp Gene: cd09679:cas10 Type: Type-III Location: 3955-4965 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)