CRISPRone

CRISPRone report for SRR9713554

♦ Seq 1: NODE_29_length_62079_cov_7.315539

⇒Summary: seq-len = 62079 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47639-62060 bp Zoom in on locus 1 x11 Gene: cls000004:cas6 Type: other Location: 47639-48370 bp Gene: unk Type: unknown Location: 48388-49014 bp Gene: unk Type: unknown Location: 48990-49769 bp Gene: cash17:cash17 Type: Type- Location: 49814-51241 bp Gene: unk Type: unknown Location: 51238-51717 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 51731-53140 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 53145-54947 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 54940-56079 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 56099-56938 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 56951-57361 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 57358-58308 bp Gene: cd09634:cas1 Type: universal Location: 58328-60598 bp Gene: cd09725:cas2 Type: universal Location: 60592-60882 bp CRISPR array Location: 61330-62060 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 61330-62060 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 61330-62060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_41_length_32189_cov_11.212330

⇒Summary: seq-len = 32189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18-547 bp Zoom in on locus 1 x8 CRISPR array Location: 18-547 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18-547 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18-547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_392252_cov_10.821003

⇒Summary: seq-len = 392252 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46532-50145 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46532-47200 bp Gene: unk Type: unknown Location: 47203-47976 bp Gene: unk Type: unknown Location: 47984-49249 bp Gene: pfam13280:WYL Type: other Location: 49246-50145 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)