CRISPRone

CRISPRone report for SRR9713559

♦ Seq 1: NODE_15_length_141255_cov_20.608669

⇒Summary: seq-len = 141255 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94699-109617 bp Zoom in on locus 1 x18 Gene: cls000004:cas6 Type: other Location: 94699-95430 bp Gene: unk Type: unknown Location: 95448-96074 bp Gene: unk Type: unknown Location: 96050-96829 bp Gene: cash17:cash17 Type: Type- Location: 96874-98301 bp Gene: unk Type: unknown Location: 98298-98777 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98791-100200 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100205-102007 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102000-103139 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103159-103998 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104011-104421 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104418-105368 bp Gene: cd09634:cas1 Type: universal Location: 105388-107658 bp Gene: cd09725:cas2 Type: universal Location: 107652-107942 bp CRISPR array Location: 108390-109617 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 108390-109617 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108390-109617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_17_length_137643_cov_21.269319

⇒Summary: seq-len = 137643 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11532-15145 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 11532-12431 bp Gene: unk Type: unknown Location: 12428-13693 bp Gene: unk Type: unknown Location: 13701-14474 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 14477-15145 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_14_length_148879_cov_23.609989

⇒Summary: seq-len = 148879 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-10543 bp Zoom in on locus 1 x37 CRISPR array Location: 907-3708 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 907-3708 bp Num of repeats: 37 Spacers: s1-s36 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3817-4149 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4153-5085 bp Gene: unk Type: unknown Location: 5205-5513 bp Gene: unk Type: unknown Location: 5580-6104 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 6120-10430 bp antiRepeat Location: 10498-10543 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-3708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)