CRISPRone

CRISPRone report for SRR9713569

♦ Seq 1: NODE_90_length_1892_cov_5.701143

⇒Summary: seq-len = 1892 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 767-1891 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 767-1891 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_32_length_56749_cov_7.494373

⇒Summary: seq-len = 56749 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45010-56748 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 45010-45741 bp Gene: unk Type: unknown Location: 45759-46385 bp Gene: unk Type: unknown Location: 46361-47140 bp Gene: cash17:cash17 Type: Type- Location: 47185-48612 bp Gene: unk Type: unknown Location: 48609-49088 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 49102-50511 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 50516-52318 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 52311-53450 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 53470-54309 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 54322-54732 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 54729-55679 bp Gene: pfam00078:RT Type: other Location: 55699-56748 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_55_length_32587_cov_7.363919

⇒Summary: seq-len = 32587 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-32587 bp Zoom in on locus 1 x14 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-32587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_15_length_107574_cov_8.486426

⇒Summary: seq-len = 107574 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17305-20918 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 17305-17973 bp Gene: unk Type: unknown Location: 17976-18749 bp Gene: unk Type: unknown Location: 18757-20022 bp Gene: pfam13280:WYL Type: other Location: 20019-20918 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)