CRISPRone

CRISPRone report for SRR9713571

♦ Seq 1: NODE_41_length_40413_cov_4.800213

⇒Summary: seq-len = 40413 bp; # of CRISPR array = 1; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-40412 bp Zoom in on locus 1 x14 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09634:cas1 Type: universal Location: 33319-35589 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35609-36559 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36556-36966 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36979-37818 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37838-38977 bp Gene: cls000742:cas10 Type: Type-III Location: 38970-40412 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31633-32587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_6_length_100721_cov_5.231925

⇒Summary: seq-len = 100721 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25380-28993 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 25380-26048 bp Gene: unk Type: unknown Location: 26051-26824 bp Gene: unk Type: unknown Location: 26832-28097 bp Gene: pfam13280:WYL Type: other Location: 28094-28993 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_69_length_26306_cov_4.717306

⇒Summary: seq-len = 26306 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-5806 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 1-363 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 368-1777 bp Gene: unk Type: unknown Location: 1791-2270 bp Gene: cash17:cash17 Type: Type- Location: 2267-3694 bp Gene: unk Type: unknown Location: 3739-4518 bp Gene: unk Type: unknown Location: 4494-5120 bp Gene: cls000004:cas6 Type: other Location: 5138-5806 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)