CRISPRone

CRISPRone report for SRR9713592

♦ Seq 1: NODE_5_length_304400_cov_9.349653

⇒Summary: seq-len = 304400 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272756-275139 bp Zoom in on locus 1 x10 CRISPR array Location: 272756-273365 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 272756-273365 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 273578-273841 bp Gene: cd09722:cas1 Type: universal Location: 273844-274083 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 274076-274456 bp Gene: cd09652:cas6 Type: other Location: 274468-275139 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272756-273365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_411838_cov_9.523356

⇒Summary: seq-len = 411838 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_279914_cov_11.483608

⇒Summary: seq-len = 279914 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186466-190076 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 186466-187134 bp Gene: unk Type: unknown Location: 187137-187907 bp Gene: unk Type: unknown Location: 187915-189180 bp Gene: pfam13280:WYL Type: other Location: 189177-190076 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_15_length_110219_cov_11.331969

⇒Summary: seq-len = 110219 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101938-109936 bp Zoom in on locus 1 x17 Gene: cd09643:cas9 Type: Subtype-II-C Location: 101938-106248 bp Gene: unk Type: unknown Location: 106264-106788 bp Gene: unk Type: unknown Location: 106855-107163 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 107283-108215 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 108219-108551 bp CRISPR array Location: 108660-109936 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 108660-109936 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108660-109936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)