CRISPRone

CRISPRone report for SRR9713604

♦ Seq 1: NODE_12_length_166325_cov_15.991802

⇒Summary: seq-len = 166325 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94714-109708 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94714-95445 bp Gene: unk Type: unknown Location: 95463-96089 bp Gene: unk Type: unknown Location: 96065-96844 bp Gene: cash17:cash17 Type: Type- Location: 96889-98316 bp Gene: unk Type: unknown Location: 98313-98792 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98806-100215 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100220-102022 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102015-103154 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103174-104013 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104026-104436 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104433-105383 bp Gene: cd09634:cas1 Type: universal Location: 105403-107673 bp Gene: cd09725:cas2 Type: universal Location: 107667-107957 bp CRISPR array Location: 108404-109708 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108404-109708 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108404-109708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_398110_cov_16.228501

⇒Summary: seq-len = 398110 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201655-203972 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 201655-202326 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202338-202718 bp Gene: cd09722:cas1 Type: universal Location: 202711-202950 bp Gene: cd09725:cas2 Type: universal Location: 202953-203216 bp CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203429-203972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_13_length_152857_cov_25.445230

⇒Summary: seq-len = 152857 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144115-152574 bp Zoom in on locus 1 x23 Gene: cd09643:cas9 Type: Subtype-II-C Location: 144115-148425 bp Gene: unk Type: unknown Location: 148441-148965 bp Gene: unk Type: unknown Location: 149032-149340 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 149460-150392 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 150396-150728 bp CRISPR array Location: 150837-152574 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 150837-152574 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 150837-152574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_2_length_506911_cov_20.268871

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80284-83897 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80284-80952 bp Gene: unk Type: unknown Location: 80955-81728 bp Gene: unk Type: unknown Location: 81736-83001 bp Gene: pfam13280:WYL Type: other Location: 82998-83897 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)