CRISPRone

CRISPRone report for SRR9713605

♦ Seq 1: NODE_26_length_66257_cov_20.049863

⇒Summary: seq-len = 66257 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 857-9315 bp Zoom in on locus 1 x23 CRISPR array Location: 857-2593 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 857-2593 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2702-3034 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3038-3970 bp Gene: unk Type: unknown Location: 4090-4398 bp Gene: unk Type: unknown Location: 4465-4989 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5005-9315 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 857-2593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_310360_cov_11.656715

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_506664_cov_15.234364

⇒Summary: seq-len = 506664 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80037-83650 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80037-80705 bp Gene: unk Type: unknown Location: 80708-81481 bp Gene: unk Type: unknown Location: 81489-82754 bp Gene: pfam13280:WYL Type: other Location: 82751-83650 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_10_length_141343_cov_12.546869

⇒Summary: seq-len = 141343 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94709-109703 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94709-95440 bp Gene: unk Type: unknown Location: 95458-96084 bp Gene: unk Type: unknown Location: 96060-96839 bp Gene: cash17:cash17 Type: Type- Location: 96884-98311 bp Gene: unk Type: unknown Location: 98308-98787 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98801-100210 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100215-102017 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102010-103149 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103169-104008 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104021-104431 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104428-105378 bp Gene: cd09634:cas1 Type: universal Location: 105398-107668 bp Gene: cd09725:cas2 Type: universal Location: 107662-107952 bp CRISPR array Location: 108399-109703 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108399-109703 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108399-109703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)